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  1. UGENE
  2. UGENE-4223

Incorrect error message is shown when wrong index agorithm is used for BWA worker

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: 1.16.1
    • Fix Version/s: None
    • Component/s: NGS, Workflow
    • Affect Type:
      Userdefined

      Description

      Use BWA aligner with these settings:
      reference: test/_common_data/bowtie2/lambda_virus.fa
      reads: test/_common_data/bowtie2/reads_1.fq
      index algorithm: div

      Error message appears: BWA tool exited with code 1

      failed test:
      index_reuse/test_0013.xml
      index_reuse/test_0014.xml

      same problem with BWA-MEM

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          Issue Links

          relates to

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-4241 Check file format in WD

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              Unassigned
              Reporter:
              vmalin Vladimir Malinovskiy
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: