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  1. UGENE
  2. UGENE-4279

File format is not supported for a valid HMM file

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    Details

    • Story Points:
      3
    • Affect Type:
      Userdefined

      Description

      I tried to use the following HMM file with HMM2:
      http://derisilab.ucsf.edu/software/vFam/vFam-A_2014.hmm

      The result is the error:

      File format is not supported.

      When I tried to use the file with HMM3 the progress of calculation was shown for some time, but at the end UGENE-4278 error occurred.

      It seems there are different HMM files for different versions of HMMER.
      UGENE should report correct errors in each case and recommend one to use an appropriate tool.

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          Issue Links

          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-4278 Can't search with HMM3

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-4280 Issues with HMM2 and HMM3

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

            Activity

              People

              Assignee:
              Unassigned
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Aleksey Tiunov [X] (Inactive)
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: