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  1. UGENE
  2. UGENE-434

BAM-ugenedb-SAM converting bug with quality scores

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.9.4
    • Component/s: None
    • Labels:
      None
    • Affect Type:
      Userdefined

      Description

      Several BAM-files do no contain Sanger quality scores.
      For example: \\ugene-quad-ubuntu\test\bam_large\5961_1#0.bam

      So, BAM->ugenedb->SAM converting can add non standart quality scores into a SAM-file. This SAM file will not be opened by UGENE.

      Expected changes:
      if a quality score is not the Sanger quality then write "*" into a SAM-file during a convertation.

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            Assignee:
            ggrekhov German Grekhov
            Reporter:
            ggrekhov German Grekhov
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              Dates

              Created:
              Updated:
              Resolved: