Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-4385

UGENE can't recognize VCF file produced by read-write workflow

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Cannot Reproduce
    • Affects Version/s: 1.16.2
    • Fix Version/s: None
    • Component/s: NGS, Workflow
    • Labels:
    • Affect Type:
      Userdefined

      Description

      Scenario to reproduce:

      1. Create a workflow "Read variations -> Write variations".
      2. Set "_common_data/snp/simple.snp" as input.
      3. Set output document format to "vcf".
      4. Launch workflow.
        Expected state: the workflow successfully finish, there is a new vcf file as a result.
      5. Open the file in UGENE.
        Expected state: variation object is added to the project.
        Current state: the file is not recognized, user is offered to select file format. If select vcf, then the file opens.

      Also, "Read variations" element can't read the result file.

        Attachments

          Issue Links

            Activity

              People

              Assignee:
              Unassigned
              Reporter:
              atiunov Aleksey Tiunov [X] (Inactive)
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: