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  1. UGENE
  2. UGENE-4560

T-Coffee memory error

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    Details

    • Type: Task
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: Basic-MSA
    • User Requests Number:
      1
    • Affect Type:
      Userdefined

      Description

      1. Open "T7 Select FASTA.txt" from UGENE-4540.
      2. Run T-Coffee.
      => The task fails with a message "T-Coffee tool exited with code 1".
      But T-Coffee fails because of memory constraints.

      There is an error in the T-Coffee log: "ERROR: FAILED TO ALLOCATE REQUIRED MEMORY (vmalloc)". Improve the T-Coffee log parser to use this information and show users a correct error message.

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            ggrekhov German Grekhov
            Watchers:
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              Dates

              Created:
              Updated:
              Resolved: