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  1. UGENE
  2. UGENE-4588

BLAST: recognition of big databases divided into parts

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    Details

    • Story Points:
      2
    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-26/08/2015, DEV-22/09/2015
    • User Requests Number:
      1
    • Affect Type:
      Userdefined

      Description

      BLAST database is a set of files with the following extensions: .nhr, .nin, .nsq (.phr, .pin, .psq for a protein database).

      But if a database is big then its .nsq file is not one file, but a set of files with the names: db_name.01.nsq, db_name.02.nsq, .... This situation is not supported by UGENE. Support it for all cases of BLAST databases using in UGENE:

      1. Query with BLAST.
      2. Query with BLAST+.
      3. Fetch sequences from local BLAST database.
        Also, check that it works well in Workflow Designer.

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            Assignee:
            kir Kirill Rasputin
            Reporter:
            ggrekhov German Grekhov
            Assigned Tester:
            Artyom Savchenko
            Watchers:
            4 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: