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  1. UGENE
  2. UGENE-4624

"Export coverage" feature works incorrectly with extended DNA alphabet

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.17
    • Fix Version/s: 1.19
    • Component/s: NGS
    • Labels:
    • Story Points:
      5
    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-22/09/2015, DEV-14/10/2015
    • Affect Type:
      Userdefined

      Description

      The strict DNA alphabet is currently hardcoded into the "ExportCoverageTask". But assembly can contain symbols from the extended DNA alphabet, e.g. when SAMtools is used to calculate the consensus. So, the exported coverage will be incorrect.

      Correct the export and support the extended alphabet. Note that there is NO need in additional options in the dialog.

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            Assignee:
            artyom_s Artyom Savchenko
            Reporter:
            atiunov Aleksey Tiunov [X] (Inactive)
            Assigned Tester:
            Aleksey Tiunov [X] (Inactive)
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: