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  1. UGENE
  2. UGENE-4628

Opening of BED file with invalid lines

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.19
    • Component/s: None
    • Labels:
      None
    • Story Points:
      1
    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-22/09/2015, DEV-14/10/2015, DEV-10/11/2015
    • Affect Type:
      Userdefined

      Description

      BED format strores annotations in lines, one annotation is described by one line. Therefore, if a line is invalid, it can be skipped and the file can be parsed further.

      In the current UGENE version, when a BED file contains an invalid line, the line is skipped and a message is added to the trace log.

      The following should be done:
      Ensure that the opening failure reasons are correct. If they are incorrect, fix them.
      A warning notification must appear. When the notification is clicked, a report is opened. The report contains detailed information about each invalid record: the line number and the problem occurred.

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            People

            Assignee:
            artyom_s Artyom Savchenko
            Reporter:
            atiunov Aleksey Tiunov [X] (Inactive)
            Assigned Tester:
            Denis Kandrov
            Watchers:
            4 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: