Some precommit tests do not work

Since Windows tests stand is broken it is possible to run the tests by hand.
Here is what I have:

write_ali_0010.xml Подзадача

{run-cmdline} завершена с ошибкой: Process finished with error: Subtask {Read MSA from E:/projects/ugene/gb2/trunk/test/_common_data/sam/scerevisiae_short.sam} is failed: Unexpected end of file [18:17][INFO] All tasks finished, shutting down [18:17][DETAILS] Registering new task: Shutdown [18:17][INFO] Starting shutdown process...

write_ali_0011.xml Подзадача {run-cmdline}

завершена с ошибкой: Process finished with error: Subtask

{Read MSA from E:/projects/ugene/gb2/trunk/test/_common_data/srfasta/001.srfa}

is failed: File 'E:/projects/ugene/gb2/trunk/test/_common_data/srfasta/001.srfa' not exists [18:17][INFO] All tasks finished, shutting down [18:17][DETAILS] Registering new task: Shutdown [18:17][INFO] Starting shutdown process...

write_ali_0012.xml Подзадача

{run-cmdline}

завершена с ошибкой: Process finished with error: Subtask

{Failure}

is failed: Document format not set [18:17][INFO] All tasks finished, shutting down [18:17][DETAILS] Registering new task: Shutdown [18:17][INFO] Starting shutdown process...