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  1. UGENE
  2. UGENE-5256

TopHat error when there is no BAM file in the output

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 1.21
    • Fix Version/s: 1.23
    • Component/s: NGS
    • Labels:
    • Story Points:
      2
    • Tests Type:
      Untestable
    • Sprint:
      DEV-23-2
    • Affect Type:
      Userdefined

      Description

      See http://ugene.net/forum/YaBB.pl?num=1458910986.

      When there is no output in the Tuxedo workflow, UGENE outputs wrong error message.

      If there is no accepted_hits. bam, a warning message should be written:

      TopHat was not able to map reads to the reference.

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            Assignee:
            ggrekhov German Grekhov
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            Eugenia Pushkova [X] (Inactive)
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: