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  1. UGENE
  2. UGENE-5317

Download SRA by ID and convert it to FASTQ files

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: 1.23
    • Fix Version/s: None
    • Component/s: NGS
    • Labels:
    • Affect Type:
      Userdefined

      Description

      A simple way to get raw data (FASTQ files) from SRA should be provided. From the command line it can be done easily using the SRA toolkit utilities "prefetch" and "fastq-dump", see https://www.biostars.org/p/111040/, http://www.ncbi.nlm.nih.gov/books/NBK242621/.

      In UGENE it can be done as a single action, i.e. a user inputs IDs and gets the files.

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              Assignee:
              Unassigned
              Reporter:
              oigl Olga Golosova
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                Updated:
                Resolved: