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  1. UGENE
  2. UGENE-5404

Raw DNA workflow doesn't work with gzipped FASTQ

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Duplicate
    • Affects Version/s: 1.24
    • Fix Version/s: None
    • Component/s: NGS, Workflow
    • Labels:
    • Environment:

      Windows

    • Affect Type:
      Userdefined

      Description

      1. Download the reads here: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?exp=SRX733663&cmd=search&m=downloads&s=seq
      2. Download the reference here: http://www.ncbi.nlm.nih.gov/nuccore/10313991
      3. Run the workflow "Raw DNA-Seq data processing" with this reference and gzipped FASTQ reads.

      => The result BAM contains only 4 aligned reads.

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          Issue Links

          duplicates

          Bug - A problem which impairs or prevents the functions of the product. UGENE-5267 Input *.fastq.zip and *.fastq.gz to NGS workflows

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              Unassigned
              Reporter:
              ggrekhov German Grekhov
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: