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  1. UGENE
  2. UGENE-5657

KAlign crashes if the input alignment contains '*'

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    Details

    • Sprint:
      DEV-39-3, DEV-39-4, DEV-39-5, DEV-39-RELEASE, DEV-40-1, DEV-40-2, DEV-40-3, DEV-50-RELEASE
    • Affect Type:
      Userdefined

      Description

      UGENE allows amino acid sequences to have '*' character, it is a "terminal stop codon" or "ter". KAlign can't process multiple sequence alignments with this character. The following alignment can't be aligned:

      >seq1
      *QACGT
      >seq2
      XQACGT
      

      All '*' can be replaced with 'X' before the aligning. It is not correct, but it is the best solution.

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            Assignee:
            kir Kirill Rasputin
            Reporter:
            atiunov Aleksey Tiunov [X] (Inactive)
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: