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Type: Bug
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Status: Closed
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Priority: Major
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Resolution: Won't Fix
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Affects Version/s: 1.26.1
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Fix Version/s: None
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Labels:
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Environment:
Windows 64 bit binary zip (full package)
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Affect Type:Userdefined
Scenario
- Open the Workflow Designer.
- Load the "Variation annotation with SnpEff" sample.
- Select the "Input Variations File" element, add "test/command_data/vcf_consensus/cat.vcf" input file.
- Select "Annotate and Predict Effects with SnpEff", select the "30c2c903" SnpEff database.
- Run the workflow.
- In the dashboard open the "External Tools" tab.
Expected state: There is "-Xmx" Java parameter in the "Arguments" field for SnpEff.
Actual state: There is no "-Xmx" parameter.
Note that the parameter is present in the detailed log.Launching SnpEff tool: C:\ProgramData\Oracle\Java\javapath\java.exe -Xmx7783M ....
- relates to
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UGENE-5643 Java architecture is not detected if java is already valid
- Closed