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  1. UGENE
  2. UGENE-5664

Missed "-Xmx" Java parameter in dashboard for SnpEff example

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: 1.26.1
    • Fix Version/s: None
    • Component/s: NGS, Workflow
    • Environment:

      Windows 64 bit binary zip (full package)

    • Affect Type:
      Userdefined

      Description

      Scenario

      1. Open the Workflow Designer.
      2. Load the "Variation annotation with SnpEff" sample.
      3. Select the "Input Variations File" element, add "test/command_data/vcf_consensus/cat.vcf" input file.
      4. Select "Annotate and Predict Effects with SnpEff", select the "30c2c903" SnpEff database.
      5. Run the workflow.
      6. In the dashboard open the "External Tools" tab.
        Expected state: There is "-Xmx" Java parameter in the "Arguments" field for SnpEff.
        Actual state: There is no "-Xmx" parameter.
        Note that the parameter is present in the detailed log.

        Launching SnpEff tool: C:\ProgramData\Oracle\Java\javapath\java.exe -Xmx7783M ....

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              Assignee:
              Unassigned
              Reporter:
              s.samoilenko Svetlana Samoilenko
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: