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  1. UGENE
  2. UGENE-5736

"Filter short scaffolds" item in the "NGS data analysis" menu

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 1.26.3
    • Fix Version/s: 1.27
    • Component/s: NGS, Workflow
    • Labels:
    • Epic Link:
    • Sprint:
      DEV-28-0
    • Affect Type:
      Userdefined

      Description

      Add item "Filter short scaffolds" item to the "Tools > NGS data analysis" main menu. It should open "Filter out short sequences" workflow.

      The items order should be the following:

      • Build index for reads mapping
      • Map reads to reference
      • A separator
      • Reads de novo assembly (with SPAdes)
      • Filter short scaffolds

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            People

            Assignee:
            dsukhomlinov Dmitrii Sukhomlinov
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            Eugenia Pushkova [X] (Inactive)
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: