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  1. UGENE
  2. UGENE-5946

Library incompatibility

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 1.29
    • Fix Version/s: None
    • Component/s: General
    • Environment:

      Linux venus 2.6.32-696.10.3.el6.x86_64 #1 SMP Thu Sep 21 12:12:50 EDT 2017 x86_64 x86_64 x86_64 GNU/Linux
      RHEL 6.9
      GNOME 2.28.2

    • Story Points:
      1
    • Affect Type:
      Userdefined

      Description

      ./ugene -ui
      /home/psgendb/local/pkg/ugene-1.29.0/ugeneui: /lib64/libz.so.1: version `ZLIB_1.2.3.3' not found (required by /home/psgendb/local/pkg/ugene-1.29.0/libU2Algorithm.so.1)
      /home/psgendb/local/pkg/ugene-1.29.0/ugeneui: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /home/psgendb/local/pkg/ugene-1.29.0/libbreakpad.so.1)
      /home/psgendb/local/pkg/ugene-1.29.0/ugeneui: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /home/psgendb/local/pkg/ugene-1.29.0/libQt5WebKit.so.5)

      This is a Red Hat Enterprise Linux system fully updated to RHEL 6.9.
      I do NOT have sysadmin privileges, so can't install packages systemwide.

      I have also tried compiling the latest ugene, and encounter an error at this poinit.

      make[1]: Entering directory `/home/psgendb/local/install/ugene-1.29.0/src/corelibs/U2Core'
      make -f Makefile.Release
      make[2]: Entering directory `/home/psgendb/local/install/ugene-1.29.0/src/corelibs/U2Core'
      g++ -c -pipe -Wno-char-subscripts -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -O2 -std=gnu+0x -D_REENTRANT -Wall -W -fPIC -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.29.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=29 -DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/usr/share/ugene/data\" -DQT_DLL -DNDEBUG -DUGENE_MIN_VERSION_SQLITE=1.25.0 -DUGENE_MIN_VERSION_MYSQL=1.25.0 -DQT_FATAL_ASSERT -DBUILDING_U2CORE_DLL -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_SCRIPT_LIB -DQT_NETWORK_LIB -DQT_XML_LIB -DQT_CORE_LIB -I. -Isrc -I_tmp -I../../include -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtScript -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtCore -I_tmp/moc/release -I/usr/lib64/qt5/mkspecs/linux-g+ -o _tmp/obj/release/AppResources.o src/globals/AppResources.cpp
      src/globals/AppResources.cpp:38:27: error: proc/readproc.h: No such file or directory
      src/globals/AppResources.cpp: In static member function ‘static size_t U2::AppResourcePool::getCurrentAppMemory()’:
      src/globals/AppResources.cpp:166: error: aggregate ‘U2::proc_t usage’ has incomplete type and cannot be defined
      src/globals/AppResources.cpp:167: error: ‘look_up_our_self’ was not declared in this scope
      make[2]: *** [_tmp/obj/release/AppResources.o] Error 1
      make[2]: Leaving directory `/home/psgendb/local/install/ugene-1.29.0/src/corelibs/U2Core'
      make[1]: *** [release] Error 2
      make[1]: Leaving directory `/home/psgendb/local/install/ugene-1.29.0/src/corelibs/U2Core'
      make: *** [sub-src-corelibs-U2Core-make_first-ordered] Error 2

      I am currently running a pre-compiled version of Ugene, 1.17 on this system, but would like to upgrade to the most recent version.

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            frist Dr. Brian Fristensky
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: