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Type: Bug
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Status: Closed
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Priority: Critical
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Resolution: Fixed
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Affects Version/s: 1.29
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Fix Version/s: 1.30
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Component/s: Basic-Nucl, Basic-Protein
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Labels:
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Story Points:3
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Sprint:DEV-30-7
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Affect Type:Userdefined
- Rename "Find tandems..." in the "Actions > Analyze" group in main menu and "Analyze" group in the SV context menu to "Find tandem repeats...".
- Rename the "Find Tandems" dialog to "Find Tandem Repeats".
- Rename the first tab in the dialog to "General", the second one to "Output".
- Move "Save annotation(s) to" and "Annotation parameters" to the "Output" tab.
- Move parameters from the "Advanced parameters" group to the "Tandem finder parameters" group on the first page, delete the empty group.
- Rename "Tandem finder parameters" to "Settings".
- Rename "Region to process" to "Search in".
- Rename "Tandem preset" to "Preset settings".
- Rename "Min period" to "Min length of repeated sequence".
- Rename "Max period" to "Max length of repeated sequence".
- Rename "Minimum tandem size" to "Min length of tandem repeat".
- Rename "Minimum repeat count" to "Min number of repeats".
- Possibly, modify the settings order inside the group.
- Change the qualifiers in the result annotations:
- Rename "repeat_len" to "num_of_repeats".
- Add a new qualifier "repeat_length". The value should be the actual length of a repeated sequence.
- Rename "tandem_size" to "whole_length".
See also: http://insilico.ehu.es/mini_tools/microsatellites/.
- relates to
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UGENE-1153 detect tandem repeats with count 2
- Closed