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  1. UGENE
  2. UGENE-5972

Writing sequence names to a CSV file doesn't work for "Write Annotations"

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.29
    • Fix Version/s: 1.30
    • Component/s: Basic-Nucl, Workflow
    • Labels:
    • Story Points:
      3
    • Sprint:
      DEV-30-7
    • Affect Type:
      Userdefined

      Description

      Link: This is a request on UGENE forum.

      Scenario:

      1. Open the WD.
      2. Create the following workflow: "Read Sequence > ORF Marker > Write Annotations".
      3. Specify "seq_with_orfs.fa" inputfile in the "Read Sequence" element.
      4. Modify the "Write Annotations" element parameters as follows:
        • Set "Document format" to "CSV".
        • Set "Write sequence names" to "True".
      5. Run the workflow.
      6. Open the result "seq_with_orfs.csv" file.
        Current result: the file does not have "Sequence name" column.
        Expected result: there is "Sequence name" column after the "Complementary" column, see "expected.csv".

        Attachments

        1. expected.csv
          0.2 kB
        2. seq_with_orfs.csv
          0.2 kB
        3. seq_with_orfs.fa
          0.5 kB

          Activity

            People

            Assignee:
            dsukhomlinov Dmitrii Sukhomlinov
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            Kirill Rasputin
            Watchers:
            0 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: