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Type: Bug
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Status: Closed
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Priority: Major
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Resolution: Fixed
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Affects Version/s: 1.29
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Fix Version/s: None
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Labels:
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Affect Type:Userdefined
Scenario:
- Open the WD.
- Add the "Read Alignment" element to the scene.
- Set "_common_data/sanger/alignment.ugenedb" file as input.
- Launch the workflow.
Expected state: the reader hasn't produced any messages.
Current state: the reader has tried to open the Sanger reads alignment as multiple sequence alignment and fails on a SAFE_POINT:[ERROR][12:53] Trying to recover from error: The alignment alphabet is NULL during importing! at src/util/MultipleSequenceAlignmentImporter.cpp:107 [ERROR][12:53] Trying to recover from error: Failed to get trackMod! at src/sqlite_dbi/SQLiteObjectDbi.cpp:1090 [ERROR][12:53] Object not found!