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  1. UGENE
  2. UGENE-5988

SAFE_POINT is triggered if "Read Alignment" WD element reads a sanger alignment

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    • Affect Type:
      Userdefined

      Description

      Scenario:

      1. Open the WD.
      2. Add the "Read Alignment" element to the scene.
      3. Set "_common_data/sanger/alignment.ugenedb" file as input.
      4. Launch the workflow.
        Expected state: the reader hasn't produced any messages.
        Current state: the reader has tried to open the Sanger reads alignment as multiple sequence alignment and fails on a SAFE_POINT:
        [ERROR][12:53] Trying to recover from error: The alignment alphabet is NULL during importing! at src/util/MultipleSequenceAlignmentImporter.cpp:107
        [ERROR][12:53] Trying to recover from error: Failed to get trackMod! at src/sqlite_dbi/SQLiteObjectDbi.cpp:1090
        [ERROR][12:53] Object not found!
        

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            atiunov Aleksey Tiunov [X] (Inactive)
            Watchers:
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              Dates

              Created:
              Updated:
              Resolved: