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Type: Improvement
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Status: Closed
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Priority: Major
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Resolution: Won't Fix
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Affects Version/s: 1.29
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Fix Version/s: None
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Component/s: Basic-Nucl, Basic-Other
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Epic Link:
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Affect Type:Userdefined
When an ABIF or SCF file is opened in UGENE, show the following dialog:
- The dialog title is "Sanger Read Opening Mode".
- There are three combo boxes inside the dialog, only one of them can be selected at a time:
- "Open a view for single read"
- "Map to reference"
- "Assemble de novo with other reads"
- The last two items should open a corresponding dialog: "Map Sanger Reads to Reference" / "De Novo Assemble Sanger Reads with CAP". The file is specified in the "Reads" field.
- If several files have been selected in the file open dialog, all ABIF/SCF files should be added to one dialog.
- If there is a mix of input file formats (e.g. a user inputs "read1.ab1", "protein.pdb", "read2.ab1"), process the Sanger reads first, then open the other files.
- is blocked by
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UGENE-5994 CAP3 output in the UGENE Database format
- Closed
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UGENE-5991 Modify the CAP3 dialog
- Closed