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  1. UGENE
  2. UGENE-6006

CAP3 output in simple alignment formats

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: 1.29
    • Fix Version/s: None
    • Component/s: Basic-MSA, Basic-Nucl
    • Labels:

      Description

      Add a new "File format" parameter to the "Result alignment" group in the "De Novo Assemble Sanger Reads with CAP3" dialog. Possible values of the parameter are:

      • ACE
      • FASTA
      • UGENE Database

      The "UGENE Database" value is used by default. When this value is selected, the input files should have sequences and chromatogram traces. If it is not so, pop-up an error message box on the task launch with the following text:

      Some reads do not have chromatogram trace. The "UGENE Database" format can't be used for such data. 
      

      Otherwise, the result is opened in the Sanger Reads Editor (see UGENE-5994).

      If "FASTA" or "ACE" is selected, open them as other files of these formats.

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              Assignee:
              Unassigned
              Reporter:
              oigl Olga Golosova
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                Updated:
                Resolved: