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  1. UGENE
  2. UGENE-6191

General scenario of CLARK validation, when reference data are not available

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: 1.31
    • Fix Version/s: None
    • Component/s: NGS
    • Affect Type:
      Userdefined

      Description

      See a scenario in UGENE-6190. It specifies to skip validation in case NCBI RefSeq data are not available.

      However, in general scenario when custom reference database is used it is not possible to provide such validation. Instead if there are error message is the log such as:

      Failed to open ../../refseq/viral/AC_000001.1.fna
Failed to open ../../refseq/viral/AC_000002.1.fna
Failed to open ../../refseq/viral/AC_000003.1.fna
...

      show a warning notification on the dashboard:

      Some reference sequences were skipped when building the CLARK database. See the CLARK log for details.

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          relates to

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6190 Validation when RefSeq data are not available for CLARK

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

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              Assignee:
              Unassigned
              Reporter:
              oigl Olga Golosova
              Watchers:
              0 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: