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Type: Bug
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Status: Closed
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Priority: Major
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Resolution: Won't Fix
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Affects Version/s: 1.31
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Fix Version/s: None
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Labels:
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Affect Type:Userdefined
Scenario #1:
- Create a workflow: "Read FASTQ File with SE Reads" -> "Classify Sequences with CLARK" -> "Classification Report".
- Set valid parameters. CLARK should work in SE reads mode. Set as input a file with name that ends with "_1", e.g. "reads_1.fastq".
- Launch the workflow.
Current state: "Classification Report" produces a result file with name "reads_CLARK_report.txt". As you can see, "_1" suffix was removed.
Scenario #2:
- Create a workflow: "Read FASTQ File with PE Reads" -> "Classify Sequences with CLARK" -> "Classification Report".
- Set valid parameters. CLARK should work in PE reads mode. Set as input files with names that ends with "_1" and "_2", e.g. "reads_1.fastq" and "reads_2.fastq".
- Launch the workflow.
Current state: "Classification Report" produces a result file with name "reads_CLARK_report.txt". As you can see, suffix was removed.
In the first scenario the suffix shouldn't be removed, because files with single-end reads doesn't have suffixes with such meaning as files with paired-end reads do. In the second scenario suffix should be removed.