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  1. UGENE
  2. UGENE-6241

Max value for "MAPQ threshold" should be "254"

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 1.31
    • Fix Version/s: 1.32
    • Component/s: NGS, Workflow
    • Labels:
    • Story Points:
      1
    • Sprint:
      DEV-32-2
    • Affect Type:
      Userdefined

      Description

      In the Sequence Alignment/Map Format Specification it is stated that MAPQ "value 255 indicates that the mapping quality is not available". Thus, the value can't be greater than 255.

      Modify "MAPQ threshold" parameter of the "Filter BAM/SAM files" workflow element so that the max value is 254 (i.e. skip value "255" as well.)

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            Assignee:
            kir Kirill Rasputin
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
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              Dates

              Created:
              Updated:
              Resolved: