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  1. UGENE
  2. UGENE-6265

Use "mpa_v20_m200" (if available) in the MetaPhlAn2 workflow element

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    Details

    • Story Points:
      2
    • Epic Link:
    • Sprint:
      DEV-32-3
    • Affect Type:
      Userdefined

      Description

      If the database is available in ".../data/ngs_classification/metaphlan2/mpa_v20_m200" (see UGENE-6264), automatically specify the correct path to it in the "Classify Sequences with MetaPhlAn2" workflow element (see UGENE-6254).

      See also UGENE-6039 with similar feature for other classification tools.

        Attachments

          Issue Links

          relates to

          New Feature - A new feature of the product, which has yet to be developed. UGENE-6254 Add "Classify Sequences with MetaPhlAn2" workflow element

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6264 Online installer: MetaPhlAn2 component and license, mpa_v20_m200 database

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6039 Unify "Database" parameters in the "build" and "classify" workflow elements

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

            Activity

              People

              Assignee:
              dsukhomlinov Dmitrii Sukhomlinov
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
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                Dates

                Created:
                Updated:
                Resolved: