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  1. UGENE
  2. UGENE-6300

MetaPhlAn2 additional script is run with incorrect python

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: master
    • Fix Version/s: 1.32
    • Component/s: NGS, Workflow
    • Labels:
      None
    • Story Points:
      2
    • Epic Link:
    • Sprint:
      DEV-32-5
    • Affect Type:
      Userdefined

      Description

      MetaPhlAn2 external tool has an additional utility script "utils/read_fastx.py". This script is called from the main script "metaphlan2.py". Currently, it is called with a python that is in the PATH variable, not with a python from the UGENE package. Fix it.

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            Assignee:
            dsukhomlinov Dmitrii Sukhomlinov
            Reporter:
            atiunov Aleksey Tiunov [X] (Inactive)
            Assigned Tester:
            Igor Chebykin [X] (Inactive)
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: