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Type: Improvement
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Status: Closed
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Priority: Major
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Resolution: Won't Fix
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Affects Version/s: 1.31.1
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Fix Version/s: None
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Labels:
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Affect Type:Userdefined
Scenario:
- Open the Workflow Designer.
- Create the following workflow: "Read File URL(s) > Filter BAM/SAM files".
- Select the "Read File URL(s)" element, add an appropriate input SAM or BAM file.
- Select the "Filter BAM/SAM files" element. Set "Output format" to "sam".
- Run the workflow.
Current result: the output file name is generated based on the input file name as follows: "filename.filtered.bam". Here filename also contains the input file extension.
Expected result: TODO
The following should be fixed:
- Rename the element from "Filter BAM/SAM files" to "Filter BAM/SAM Files" ('F' character should be uppercase).
- Correct the list of values of the "Output format" parameter. The values should be uppercase: SAM, BAM.
- Correct the output file extension in case of "SAM" output format (see the scenario above).