Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-6406

GTF parsing errors for chr20.gtf

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 1.32
    • Fix Version/s: None
    • Component/s: NGS
    • Labels:
    • Story Points:
      2
    • Epic Link:
    • Sprint:
      DEV-33-3, DEV-33-4, DEV-35-2
    • Affect Type:
      Userdefined

      Description

      See data from UGENE-6398. When the *.gtf file is opened in UGENE there are a lot of parsing errors in the log (see "TRACE").

      The file format should be OK. Fix the the file parsing. Make sure to add an automated test.

        Attachments

          Issue Links

          relates to

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6398 Parse attribute column of a GTF file and create correct qualifiers

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-6781 GTF parsing errors for GTF from UCSC with additional whitespace characters

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              kir Kirill Rasputin
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              3 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: