Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-6494

Concatenation of queries for BLAST+

    XMLWordPrintable

    Details

    • Affect Type:
      Userdefined

      Description

      BLAST+ is optimized for processing several queries simultaneously (https://www.ncbi.nlm.nih.gov/books/NBK279668/#usermanual.Concatenation_of_queries). UGENE launches BLAST+ for each query sequence in the following cases:

      • when BLAST+ is launched from the "Tools" menu and a file with multiple sequences is input
      • when BLAST+ element in the Workflow Designer is used and multiple sequences are input

      In case of many short query sequences it will cause a performance hit.

        Attachments

          Activity

            People

            Assignee:
            Unassigned
            Reporter:
            atiunov Aleksey Tiunov [X] (Inactive)
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: