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  1. UGENE
  2. UGENE-6526

"A tool with the ID SAMtools is absent" error on running variant calling workflow

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: master
    • Fix Version/s: 33
    • Component/s: NGS, Workflow
    • Labels:
      None
    • Story Points:
      1
    • Sprint:
      DEV-33-RELEASE
    • Affect Type:
      Userdefined

      Description

      Release candidate build version 33: Windows 64 bit (NSIS, full package)

      Scenario:

      1. Open the Workflow Designer.
      2. Load "Call variants with SAMtools" sample workflow.
      3. Set "Read Assembly (BAM/SAM)" to "_common_data/bam/scerevisiae.bam1.sam".
      4. Set "Read Sequence" to "_common_data/genbank/pBR322.gb".
      5. Add "Output variants file".
      6. Run the workflow.
        Expected result: There are no errors.
        Current result: There is an unexpected error:
        (1) A tool with the ID SAMtools is absent
        

      Affected tests:

      • GUITest_regression_scenarios_test_1735
      • GUITest_regression_scenarios_test_1738
      • GUITest_regression_scenarios_test_2192
      • GUITest_regression_scenarios_test_2266_1
      • GUITest_regression_scenarios_test_5012
        XML tests:
      • filter_bam/test_0001.xml- ..filter_bam/test_0006.xml
      • rmdup_bam/test_0001.xml -.. rmdup_bam/test_0003.xml
      • workflow_samples/raw_ngs/test_0003.xml -.. workflow_samples/raw_ngs/test_0006.xml

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            Assignee:
            atiunov Aleksey Tiunov [X] (Inactive)
            Reporter:
            s.samoilenko Svetlana Samoilenko
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: