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Type:
Improvement
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Status: Closed
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Priority:
Major
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Resolution: Fixed
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Affects Version/s: 33
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Fix Version/s: 34
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Component/s: Basic-Protein
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Story Points:1
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Sprint:DEV-34-8
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Affect Type:Userdefined
SWISS-PROT format has been recently updated - features are described in another way. Previously they were described as follows:
FT SIGNAL 1 33 {ECO:0000256|SAM:SignalP}.
FT CHAIN 34 138 {ECO:0000256|SAM:SignalP}.
FT /FTId=PRO_5002627671.
FT DOMAIN 36 94 IlGF. {ECO:0000259|SMART:SM00078}.
FT REGION 110 138 Disordered. {ECO:0000256|SAM:MobiDB-
FT lite}.
FT COMPBIAS 124 138 Polar. {ECO:0000256|SAM:MobiDB-lite}.
Since 19 December 2019 they are described as follows:
FT SIGNAL 1..33 FT /evidence="ECO:0000256|SAM:SignalP" FT CHAIN 34..138 FT /evidence="ECO:0000256|SAM:SignalP" FT /id="PRO_5002627671" FT DOMAIN 36..94 FT /note="IlGF" FT /evidence="ECO:0000259|SMART:SM00078" FT REGION 110..138 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 124..138 FT /note="Polar" FT /evidence="ECO:0000256|SAM:MobiDB-lite"
In UGENE sample data files of previous format are currently stored. That are files: "DOVTW9.txt", "P01375.txt", "P16152.txt".
Download files with the same IDs from the SWISS-PROT database. The downloaded files should be of the new format. Put them to the "/data/sample/Swiss-Prot" folder instead of the old files.
- relates to
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UGENE-6661 Files of SWISS-PROT format downloaded from UniProt/SWISS-PROT database can't be opened
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- Closed
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