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  1. UGENE
  2. UGENE-6819

Anything but sequences with quality should be filtered before "Sanger mapping"

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
    • Affect Type:
      Userdefined

      Description

      Scenario:

      1. Click "Sanger data analysis -> Map reads to reference...". 
      2. Set "common_data/sanger/reference.gb" as reference and all "_common_data/sanger/sanger*.abi"as reads.
      3. Add "_common_data/bam/1.bam" as a read and click "Map"
        Expected result: "sanger_*.abi" were aligned, "1.bam" was skipped. The following message appeared in the log on the "Error" level:
        The file "full/path/to/1.bam" isn't supported for the "Map Sanger reads to reference" analysis.
        

        Actual result: The aligning process finishes with error.

      4. When the execution finishes, click on the notification report.
        Expected result: Check the attached report.
        Actual result: The report doesn't mention the skipped file.

      Check, that the all formats, which aren't able to be mapped as reads are filtered correctly and do not interrupt the "Sanger alignment" execution.

        Attachments

        1. Report.html
          2 kB
          Dmitrii Sukhomlinov

          Activity

            People

            Assignee:
            dsukhomlinov Dmitrii Sukhomlinov
            Reporter:
            dsukhomlinov Dmitrii Sukhomlinov
            Assigned Tester:
            Evelina
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: