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  1. UGENE
  2. UGENE-6825

SAFE_POINT during "In Silico PCR" in case of absent of sequence

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
    • Story Points:
      5
    • Sprint:
      DEV-36-2, DEV-36-3, DEV-36-4, DEV-36-5
    • Affect Type:
      Userdefined

      Description

      Scenario 1:

      1. Open WD and choose the "In Silico PCR" sample.
        Expected state: the wizard was opened.
      2. Select "test/general/_common_data/fasta/22.gb" as sequence and click "Next".
      3. Select "test/general/_common_data/cmdline/pcr/primers2.fa" as "Primers URL" and click "Next".
      4. Click "Run"
        Expected state: workflow finished with with the following error:
        The input file"22.gb" doesn't contain valid sequence.
        

        Current state: SAFE_POINT.

        Trying to recover from error: Internal error! The object unexpectedly does not exist: Sequence at src\InSilicoPcrWorker.cpp:319
        Assertion failed: !seq.isNull(), file src\InSilicoPcrWorker.cpp, line 319
        

      Scenario 2:

      1. Repeat all actions from the "Scenario 1", but choose the input sequence "ugene/data/samples/GFF/5prime_utr_intron_A20.gff" on the step 2.
        Expected state: workflow finished with with the following error:
        The input file "5prime_utr_intron_A20.gff" doesn't contain valid sequence.
        

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            People

            Assignee:
            kir Kirill Rasputin
            Reporter:
            dsukhomlinov Dmitrii Sukhomlinov
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            3 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: