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  1. UGENE
  2. UGENE-7012

For empty assembly, zero length is an incorrect attribute

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 47
    • Component/s: NGS, Workflow
    • Labels:
    • Sprint:
      DEV-47-1
    • Affect Type:
      Userdefined

      Description

      Scenario

      1. Select "Tools->NGS data analysis->Extract consensus from assemblies..."
      2. Set "_common_data/ugenedb/1.bam.ugenedb" as an input
      3. Click "Run"
        Actual state: there are 168 messages in the log with text "ignored incorrect value of attribute reference_length_attribute: should be > 0, got 0. Bad attribute removed!"
        Expected state: no messages

      1.bam.ugenedb contains 168 empty assemblies. Each assembly has a reference_length_attribute of 0, which is considered incorrect. I suggest making the value 0 correct for reference_length_attribute, if assembly is empty

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            biserova Evelina
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: