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  1. UGENE
  2. UGENE-7014

Exporting subalignment doesn't output the correct selection of sequences

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 37
    • Fix Version/s: 38
    • Component/s: Basic-MSA
    • Environment:

      UGENE v37.0, 64bit Debian GNU/Linux

    • Story Points:
      8
    • Sprint:
      DEV-38-3, DEV-38-4
    • Affect Type:
      Userdefined

      Description

      I have the attached DQB1_exon4.nexus opened in an MSA view. I right click to 'Export', then 'Save subalignment', keep all original columns of the alignment but select some sequences only (e.g. all the "_local" sequences), and then I export to Fasta or to ClustalW format, and the result is the same in both cases: I have the right number of sequences, but wrong sequences: some of the sequences I had selected are not in the output, while some of the non-selected ones are in the output file.

        Attachments

        1. exporting subalignment.png
          exporting subalignment.png
          81 kB
        2. DQB1_exon4.nexus
          6 kB
        3. COI_subalign.aln
          0.3 kB

          Activity

            People

            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            jbde Jean-Baka Domelevo Entfellner
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            3 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: