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Type:
Improvement
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Status: Closed
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Priority:
Major
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Resolution: Won't Fix
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Affects Version/s: None
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Fix Version/s: None
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Component/s: None
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Labels:
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Sprint:DEV-40-1, DEV-40-2, DEV-40-3, DEV-40-4, DEV-40-5, DEV-40-RELEASE, DEV-41-1, DEV-41-2, DEV-41-3, DEV-41-4, DEV-41-5, DEV-41-RELEASE, DEV-42-1, DEV-42-2, DEV-42-3, DEV-42-4, DEV-42-5, DEV-42-RELEASE, DEV-43-1, DEV-43-2, DEV-43-3, DEV-43-4, DEV-43-5, DEV-43-RELEASE, DEV-44-1, DEV-44-2, DEV-44-3
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Affect Type:Userdefined
Take a look at the attached sequence. There is a "CDS" annotation, which starts from the first base. But, this annotation also have the "codon_start" qualifier, which is equal to 3. That means, that this "CDS" annotation should start from the 3rd base.
Also, when you copy the selected joined annotation there are gaps between joined parts, which shouldn't be. So, scenarios:
Scenario 1:
- **Open the attached "MT456994.gb" sequence.
Current state: there is a "CDS" annotation with the "codon_start" qualifier which equals to 3 and the "translation" qualifier with some amino acid sequence. - Click on the "CDS" annotation.
Expected state: the annotation on the 3rd strand (as it's shown in the "codon_start" qualifier). - Click "Copy annotation amino acid".
Expected state: the same sequence as in the "translation" qualifier is copied to the clipboard, no gaps between joined parts.
Scenario 2:
- **Open the attached "murine.gb" sequence.
Current state: there is a "CDS" annotation without the "codon_start" qualifier. - Click on the "CDS" annotation.
Expected state: the annotation on the 1rd strand (by default, if "codon_start" is absent).