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  1. UGENE
  2. UGENE-7279

[Tree] Some tree building settings are wrong

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
    • Sprint:
      DEV-44-2
    • Affect Type:
      Userdefined

      Description

      1. Open data/samples/CLUSTALW/COI.aln.
      2. Click "Build Tree".
      3. Check "Gamma distributed rates across sites".
      4. Set "Coefficient of variation of substitution rate among sites" to 99.99.
      5. Set "Transition/transversion ratio" to 199.
      6. Select Jukes-Cantor distance matrix model.
      7. Click Build.
        Expected: tree built.
        Current state: tree isn't built, errors in log:
        [Tasks][ERROR] process:11696>Task {PHYLIP task} finished with error: Subtask {NeighborJoin algorithm} is failed: Calculated distance matrix is invalid

      UGENE must launch the task with correct parameters.

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            biserova Evelina
            Assigned Tester:
            Evelina
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: