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  1. UGENE
  2. UGENE-728

Add support for lowercase view in a sequence or alignment

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.10
    • Fix Version/s: 1.10.1, 1.11
    • Component/s: None
    • Labels:
    • Affect Type:
      Userdefined

      Description

      Sometimes we would make some manually modifications on a sequence or alignment. For example, I would write a fasta DNA sequence like:

      >one_test_sequence
      AAAAAAAAAAAAAATTTTTTTTTTTTTTTTTTTTTTgtatttttttttttttttttttagGGGGGGGGGCCCCCCCCCCCCC

      The lowercase region "gtatttttttttttttttttttag" means it is an intron region. However, when I load it into UGENE, all residues become uppercase and I can't recognize the intron region easily. Some other softwares such as BioEdit would keep the original base(uppercase or lowercase or mixed) in the sequence view.

      I think it is not difficult to make this subtle change, right?

        Attachments

        1. settings.bmp
          settings.bmp
          512 kB
        2. lower_case.bmp
          lower_case.bmp
          658 kB

          Activity

            People

            Assignee:
            ggrekhov German Grekhov
            Reporter:
            tao Tao Zhu
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: