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  1. UGENE
  2. UGENE-7343

HMMER3 search adapter produce incorrect results

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 40
    • Component/s: None
    • Labels:
      None
    • Sprint:
      DEV-40-2, DEV-40-3
    • Affect Type:
      Userdefined

      Description

      I worked on ignored/muted XML tests and found that after HMM3 migration from internal to external tool we have an awful regression that always was in the test but has never been addressed: HMMER search results parser incorrectly parses HMMER output: HMMER uses 1..N notation while our parser reads it as 0..N

      As the result all HMMER3 results in UGENE are shifted by 1.

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            yalgaer Yuliya Algaer
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: