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Type: Bug
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Status: Closed
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Priority: Critical
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Resolution: Fixed
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Affects Version/s: None
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Fix Version/s: 40
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Component/s: None
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Labels:None
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Environment:
Windows
Nvidia GPU
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Sprint:DEV-40-4
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Affect Type:Userdefined
Open human_T1.fa. Call Smith–Waterman dialog. Fill in the dialog and start search:
- Pattern: A
Search in: Translation
Algorithm version: CUDA
Expected: no errors.
Current state: see log with SAFE_POINT below.
- Pattern: A
Search in: Translation
Region: 1-1
Algorithm version: CUDA
Expected: no crash
Current state: crash.
1 case log:
[Algorithms][DETAILS][12:26] Strand: 0
[Tasks][DETAILS][12:26] Registering new task: SmithWatermanTask
[Core Services][TRACE][12:26] AppResource CudaGpu ::tryAcquire 1, available 1
[Core Services][TRACE][12:26] AppResource Memory ::tryAcquire 2, available 7906
[Algorithms][DETAILS][12:26] The Smith-Waterman search allocates ~6 bytes (5.72205e-06 Mb) on CUDA device
[Core Services][DETAILS][12:26] GPU model: GeForce GTX 1050
[Tasks][TRACE][12:26] Promoting task {SmithWatermanTask} to 'Prepared'
[Tasks][TRACE][12:26] Promoting task {Smith Waterman2 SequenceWalker} to 'Prepared'
[Console][TRACE][12:26] AppMemory: 117Mb; Locked memory AppResource: 162/8066; SQLite memory 0Mb, max 1Mb
[Tasks][TRACE][12:26] Promoting task {Sequence walker subtask} to 'Prepared'
[Tasks][TRACE][12:26] Promoting task {SmithWatermanTask} to 'Running'
[Tasks][TRACE][12:26] Promoting task {Smith Waterman2 SequenceWalker} to 'Running'
[Core Services][TRACE][12:26] AppResource Threads ::tryAcquire 1, available 1000
[Tasks][TRACE][12:26] Promoting task {Sequence walker subtask} to 'Running'
[Algorithms][DETAILS][12:26] START SmithWatermanAlgorithmCUDA::launch
[Smith Waterman CUDA][DETAILS][12:26] partsNumber: 14 queryDevider: 1
[Smith Waterman CUDA][DETAILS][12:26] seqLen: 66650 partSeqSize: 4764 overlapSize: 3
[Smith Waterman CUDA][DETAILS][12:26] queryLen 1 partQuerySize: 1
[Smith Waterman CUDA][DETAILS][12:26] GLOBAL MEMORY USED 1908 KB
[Smith Waterman CUDA][DETAILS][12:26] SHARED MEM SIZE USED: 24 B
[Smith Waterman CUDA][TRACE][12:26] CUDA ERROR HAPPEN, errorId: 35
[Algorithms][DETAILS][12:26] FINISH SmithWatermanAlgorithmCUDA::launch
[Performance][DETAILS][12:26] SW alg CUDA run time is 0
[Core Services][TRACE][12:26] AppResource Threads ::release 1, available 999
[Tasks][TRACE][12:26] Promoting task {Sequence walker subtask} to 'Finished'
[Tasks][TRACE][12:26] Promoting task {Sequence walker subtask} to 'Prepared'
[Core Services][TRACE][12:26] AppResource Threads ::tryAcquire 1, available 1000
[Tasks][TRACE][12:26] Promoting task {Sequence walker subtask} to 'Running'
[Console][TRACE][12:26] AppMemory: 128Mb; Locked memory AppResource: 162/8066; SQLite memory 0Mb, max 1Mb
[Algorithms][DETAILS][12:26] START SmithWatermanAlgorithmCUDA::launch
[Smith Waterman CUDA][DETAILS][12:26] partsNumber: 14 queryDevider: 1
[Smith Waterman CUDA][DETAILS][12:26] seqLen: 66649 partSeqSize: 4764 overlapSize: 3
[Smith Waterman CUDA][DETAILS][12:26] queryLen 1 partQuerySize: 1
[Smith Waterman CUDA][DETAILS][12:26] GLOBAL MEMORY USED 1908 KB
[Smith Waterman CUDA][DETAILS][12:26] SHARED MEM SIZE USED: 24 B
[Smith Waterman CUDA][TRACE][12:26] CUDA ERROR HAPPEN, errorId: 35
[Algorithms][DETAILS][12:26] FINISH SmithWatermanAlgorithmCUDA::launch
[Performance][DETAILS][12:26] SW alg CUDA run time is 0
[Core Services][TRACE][12:26] AppResource Threads ::release 1, available 999
[Tasks][TRACE][12:26] Promoting task {Sequence walker subtask} to 'Finished'
[Tasks][TRACE][12:26] Promoting task {Sequence walker subtask} to 'Prepared'
[Core Services][TRACE][12:26] AppResource Threads ::tryAcquire 1, available 1000
[Tasks][TRACE][12:26] Promoting task {Sequence walker subtask} to 'Running'
[Algorithms][DETAILS][12:26] START SmithWatermanAlgorithmCUDA::launch
[Smith Waterman CUDA][DETAILS][12:26] partsNumber: 14 queryDevider: 1
[Smith Waterman CUDA][DETAILS][12:26] seqLen: 66649 partSeqSize: 4764 overlapSize: 3
[Smith Waterman CUDA][DETAILS][12:26] queryLen 1 partQuerySize: 1
[Smith Waterman CUDA][DETAILS][12:26] GLOBAL MEMORY USED 1908 KB
[Console][TRACE][12:26] AppMemory: 129Mb; Locked memory AppResource: 162/8066; SQLite memory 0Mb, max 1Mb
[Smith Waterman CUDA][DETAILS][12:26] SHARED MEM SIZE USED: 24 B
[Smith Waterman CUDA][TRACE][12:26] CUDA ERROR HAPPEN, errorId: 35
[Algorithms][DETAILS][12:26] FINISH SmithWatermanAlgorithmCUDA::launch
[Performance][DETAILS][12:26] SW alg CUDA run time is 0
[Core Services][TRACE][12:26] AppResource Threads ::release 1, available 999
[Tasks][TRACE][12:26] Promoting task {Sequence walker subtask} to 'Finished'
[Tasks][TRACE][12:26] Promoting task {Smith Waterman2 SequenceWalker} to 'Finished'
[Tasks][TRACE][12:28] Promoting task {SWResultsPostprocessing} to 'Prepared'
[Core Services][TRACE][12:28] AppResource Threads ::tryAcquire 1, available 1000
[Tasks][TRACE][12:28] Promoting task {SWResultsPostprocessing} to 'Running'
[Core Services][TRACE][12:28] AppResource Threads ::release 1, available 999
[Tasks][TRACE][12:28] Promoting task {SWResultsPostprocessing} to 'Finished'
[Algorithms][DETAILS][12:28] 1630 results found
[Input/Output][TRACE][12:28] SQL: error: Unexpected query result code: 19 (rtree constraint failed: FeatureLocationRTreeIndex.(start
[Core Services][ERROR][12:28] Trying to recover from error: Invalid DB reference at C:\BuildAgent\work\release\ugene\src\corelibs\U2Core\src\datatype\Annotation.cpp:48
[Core Services][ERROR][12:28] Trying to recover from error: Unexpected query result code: 19 (rtree constraint failed: FeatureLocationRTreeIndex.(start
[Input/Output][TRACE][12:28] SQL: error: SQLite: Error finalizing statement: Error querying database: rtree constraint failed: FeatureLocationRTreeIndex.(start
- created
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UGENE-7366 Smith–Waterman with CUDA builds with errors
- Closed