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Type: Improvement
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Status: Closed
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Priority: Major
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Resolution: Fixed
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Affects Version/s: None
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Fix Version/s: 40
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Component/s: None
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Labels:None
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Sprint:DEV-40-4
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Affect Type:Userdefined
I tried to generate large test sequences using Tools->Generate sequence menu to test memory overflow issues and found that it works incredibly slow and has 0 tests.
The reasons why it works slow:
1) Fasta file writer is very slow because it reads every FASTA line from the DBI.
2) Random sequence generator algorithm is too slow: takes 6 seconds to generate 100mb on my computer in debug mode which is unacceptable for a such simple task.
The task is to optimize these trivial places and add performance counters into the code.
- created
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UGENE-7405 Sequence generation crash with invalid reference path
- Closed
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UGENE-7413 1% of letters of generated sequence are uniform distributed
- Closed