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  1. UGENE
  2. UGENE-7388

SAFE_POINT if select "Copy (custom format)" action on aligment with gaps

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
    • Sprint:
      DEV-41-4, DEV-41-5
    • Affect Type:
      Userdefined

      Description

      Issue is reproducible on 39.0/40.0 versions
      Scenario:

      1. Select align_subalign.aln, see attachment
      2. Select from context menu Export/Save subaligment
      3. In dialog "Save selection as subaligment" select Column from 16 to 24 where only gaps were present
      4. Exported file align_subalign_subalign.aln appears in the project
      5. Select s1 and s2 sequences
      6. Select from context menu Copy/Paste->Copy(custom format)
        SAFE_POINT triggered
        Invalid crop column range: 1..9
        Trying to recover from error: Invalid crop column range: 1..9 at D:\ugene\ugene\src\corelibs\U2Core\src\gobjects\MultipleSequenceAlignmentObject.cpp:131
        Assertion failed: 0, file D:\ugene\ugene\src\corelibs\U2Core\src\gobjects\MultipleSequenceAlignmentObject.cpp, line 131
        

        Attachments

        1. align_subalign.aln
          0.5 kB
          Svetlana Samoilenko

          Activity

            People

            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            s.samoilenko Svetlana Samoilenko
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: