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  1. UGENE
  2. UGENE-7416

Crash on opening cds.fna file from ncbi site

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 41
    • Component/s: None
    • Labels:
    • Sprint:
      DEV-41-1, DEV-41-2, DEV-41-3
    • Affect Type:
      Userdefined

      Description

      Crash report 24282 on Windows rev. 39.0

      Load cds.fna file from ncbi site

      SQL: error: Unexpected query result code: 19 (rtree constraint failed: FeatureLocationRTreeIndex.(start<=end)) in query: INSERT INTO FeatureLocationRTreeIndex(id, start, end) VALUES(?1, ?2, ?3)
      [12:30:17.404] [Core Services] Trying to recover from error: Invalid DB reference at C:\BuildAgent\work\release\ugene\src\corelibs\U2Core\src\datatype\Annotation.cpp:48

      [12:30:17.404] [Core Services] Trying to recover from error: Unexpected query result code: 19 (rtree constraint failed: FeatureLocationRTreeIndex.(start<=end)) at C:\BuildAgent\work\release\ugene\src\corelibs\U2Core\src\datatype\AnnotationGroup.cpp:120
      [12:30:21.892] [Core Services] AppResource Memory ::release 1124, available 14796
      [12:30:22.144] [Input/Output] SQL: error: SQLite: Error finalizing statement: Error querying database: rtree constraint failed: FeatureLocationRTreeIndex.(start<=end) in query: INSERT INTO FeatureLocationRTreeIndex(id, start, end) VALUES(?1, ?2, ?3)

      Task tree:
      Opening document: D:/PhD Research/SARS-CoV-2/ncbi_dataset/data/cds.fna (Running) 100
      -Loading documents (Running) 100
      --Opening view for document: cds.fna (Running) 100
      ---Load document: 'cds.fna' (Running) 100
      ----Load 'cds.fna' (Running) 100
      -----Read document: 'cds.fna' (Running) 100

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            s.samoilenko Svetlana Samoilenko
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: