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  1. UGENE
  2. UGENE-7417

SW search CUDA error

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: None
    • Fix Version/s: 41
    • Component/s: None
    • Labels:
    • Affect Type:
      Userdefined

      Description

      1. Open human_t1.fa
      2. Search pattern "aac" with SW and CUDA algorithm
      Expected state: ~6k results found
      Actual state: no results and 'CUDA malloc error' in the log

      [DETAILS][19:53] Registering new task: SmithWatermanTask
      [DETAILS][19:53] The Smith-Waterman search allocates ~6 bytes (5.72205e-06 Mb) on CUDA device
      [DETAILS][19:53] GPU model: GeForce GTX 1660 SUPER
      [DETAILS][19:53] START SmithWatermanAlgorithmCUDA::launch
      [DETAILS][19:53] partsNumber: 14 queryDevider: 1
      [DETAILS][19:53] seqLen: 199950 partSeqSize: 14297 overlapSize: 15
      [DETAILS][19:53] queryLen 5 partQuerySize: 5
      [ERROR][19:53] CUDA malloc error
      [DETAILS][19:53] FINISH SmithWatermanAlgorithmCUDA::launch
      [DETAILS][19:53] SW alg CUDA run time is 0 
      [DETAILS][19:53] START SmithWatermanAlgorithmCUDA::launch
      [DETAILS][19:53] partsNumber: 14 queryDevider: 1
      [DETAILS][19:53] seqLen: 199950 partSeqSize: 14297 overlapSize: 15
      [DETAILS][19:53] queryLen 5 partQuerySize: 5
      [ERROR][19:53] CUDA malloc error
      [DETAILS][19:53] FINISH SmithWatermanAlgorithmCUDA::launch
      [DETAILS][19:53] SW alg CUDA run time is 0 
      [DETAILS][19:53] 0 results found
      

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            kir Kirill Rasputin
            Watchers:
            3 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: