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  1. UGENE
  2. UGENE-7450

Support matching of extended DNA alphabet symbols to the corresponding standard alphabet in Find algorithm

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
    • Sprint:
      DEV-44-5, DEV-44-RELEASE, DEV-45-1, DEV-45-2, DEV-45-3, DEV-45-4, DEV-45-5, DEV-45-RELEASE, DEV-46-1, DEV-46-2, DEV-46-3, DEV-46-4, DEV-46-5, DEV-46-RELEASE, DEV-47-1, DEV-47-2, DEV-47-3, DEV-47-4, DEV-47-5, DEV-47-RELEASE, DEV-48-1, DEV-48-2, DEV-48-3, DEV-48-4, DEV-48-5, DEV-48-RELEASE, DEV-49-1, DEV-49-2, DEV-49-3, DEV-49-4, DEV-49-5, DEV-49-RELEASE, DEV-50-1, DEV-50-2, DEV-50-3, DEV-50-4, DEV-50-5, DEV-50-RELEASE
    • Affect Type:
      Userdefined

      Description

      In expanded DNA alphabet some symbols are ambiguous and can map into multiple DNA bases. Example: R maps to A or G.

      "Find Algorithm" used in UGENE should support this feature and match expanded symbols to standard ones.

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            yalgaer Yuliya Algaer
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: