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  1. UGENE
  2. UGENE-7497

[Msa, Et] Correct support for MAFFT with amino_ext.aln and amino_ext.fa

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    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-47-1, DEV-47-2, DEV-47-3, DEV-47-4, DEV-47-5, DEV-47-RELEASE, DEV-48-1, DEV-48-2, DEV-48-3, DEV-48-4, DEV-48-5, DEV-48-RELEASE, DEV-49-1, DEV-49-2, DEV-49-3, DEV-49-4, DEV-49-5, DEV-49-RELEASE, DEV-50-1, DEV-50-2, DEV-50-3, DEV-50-4, DEV-50-5, DEV-50-RELEASE, DEV-51-1
    • Affect Type:
      Userdefined

      Description

      • Open _common_data/clustal/amino_ext.aln
      • Click on the toolbar "Align sequence(s) to this alignment"->"Align sequence(s) to alignment with MAFFT...". The sequence file selection dialog appears.
      • Select _common_data/fasta/amino_ext.fa
      • Wait for tasks to complete.
        Expected: the task completed successfully.
        Current state: the task ends with the error "Data from the "amino_ext.fa" file can't be alignment to the "amino_ext" alignment - subtask {align sequences to alignment task} is failed: document is empty".

      Needs to add the "--anysymbol" flag when running the MAFFT tool (see Trace log and/or correct behavior for default_amino_short.aln and amino_ext.fa).

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            biserova Evelina
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated: