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  1. UGENE
  2. UGENE-7683

Impossible to open sam files in the folder with non-ASCII symbols

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Cannot Reproduce
    • Affects Version/s: 42, 43, 44
    • Fix Version/s: None
    • Component/s: None
    • Labels:
      None
    • Sprint:
      DEV-45-3, DEV-45-4, DEV-45-5
    • Affect Type:
      Userdefined

      Description

      The problem with opening assembly files from a directory with non-ASCII symbols in path (see UGENE-5371) still exists for unsorted sam files. Note, if there are no non-ASCII characters in the path, the file opens successfully.
      Scenario:

      1. Copy _common_data\bowtie\index\e_coli.sam into "моя работа" folder
      2. Open this file in UGENE -> "Open Sam file" dialog appears
      3. Click "Import" button
        Expected state: File is opened
        Actual state:  Error message about not being able to create sorted file:

      'Loading documents' task failed: Subtask {Opening view for document: e_coli.sam} is failed: Subtask {Adding document to project: e_coli.sam} is failed: Subtask {BAM/SAM file import: e_coli.sam} is failed: Subtask {Prepare assembly file to import} is failed: Can't build the index: D:/моя работа2/e_coli.sam.bam_sorted.bamDocument was removed

       

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          Issue Links

          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-7687 [Samtools] Crash bwa-mem Unicode tmp

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-5371 Problem with opening assembly from folder with non-ASCII symbols in path

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

            Activity

              People

              Assignee:
              yalgaer Yuliya Algaer
              Reporter:
              s.samoilenko Svetlana Samoilenko
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: