Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-7700

[Sam, crash] Long path

    XMLWordPrintable

    Details

    • Tests Type:
      Functional/Unit
    • Sprint:
      DEV-45-RELEASE, DEV-46-1
    • User Requests Number:
      1
    • Affect Type:
      Userdefined

      Description

      Perhaps the problem is reproduced only on Windows.

      1. Create path "/Userr phd think pad/OneDrive - Higher Education Commission/Userr Data 01 August 1111/PhD DM/DNA Sequencing all/ngs Sequencing data 01 Jan 1111/FRESH WORK 01 JULY 1111/AAA2 AA AAAAA Jan 00A00000_R1 & R2.fastq/ugene work".
      2. Reset the settings to default.
      3. Open _common_data/scenarios/_regression/7700/bwa.uwl
        The "Choose Output Directory" dialog appears.
      4. Set the created folder as the required directory in this dialog.
      5. Click OK.
        The Workflow window appears.
      6. Set _common_data/bwa/control-chr21.fastq and nrsf-chr21.fastq as input to the "Read File URL(s)" element.
      7. Set _common_data/bwa/NC_000021.gbk.fa as the "Reference genome" of the "Map Reads with BWA" element.
      8. Run workflow.
        Current state: crash.
        Expected: one of the options:
        1. an error at step of selecting Workflow Output Folder,
        2. a workflow validation error,
        3. the workflow task finished successfully, generating non-empty output files.
      9. Copy the file _common_data/bwa/pattern1/out.sam to the workflow output directory created by UGENE before the crash: "/Userr phd think pad/.../ugene work/YYYY.MM.dd_hh-mm/report/bwa".
      10. Reset the settings to default.
      11. Open the copied sam file from the long path directory.
        The "Import SAM File" dialog appears.
      12. Click "Import".
        Current state: crash.
        Expected: one of the options:
        1. the ugenedb file is successfully created in the default directory and opened without problems in UGENE,
        2. by default, a different directory is suggested for saving the ugenedb file, it is impossible to specify an incorrect path, all auxiliary files are saved to the correct directory.

        Attachments

          Issue Links

            Activity

              People

              Assignee:
              biserova Evelina
              Reporter:
              biserova Evelina
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: