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  1. UGENE
  2. UGENE-7714

SAFE_POINT on convertation bam file to ugenedb

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 45
    • Fix Version/s: None
    • Component/s: None
    • Sprint:
      DEV-45-5, DEV-45-RELEASE, DEV-46-1, DEV-46-2, DEV-46-3, DEV-46-4
    • Affect Type:
      Userdefined

      Description

      Looks like regression from UGENE-7338.
      Issue is not reproducible in 43.0, 44.0.

      Scenario:

      1. Open common_data/bam/1.bam
      2. In "Import Bam file" dialog click Deselect All button
      3. Check in "Import Unmapped reads" checkbox
      4. Click Import button
        Expected state: 1.ugenegb is created and opened
        Actual state: SAFE_POINT
      Trying to recover from error: !stateInfo.hasError() at D:\ugene\ugene\src\plugins\dbi_bam\src\ConvertToSQLiteTask.cpp:556
Assertion failed: false, file D:\ugene\ugene\src\corelibs\U2Core\src\globals\U2SafePoints.cpp, line 36

      [ERROR][15:16] Subtask {Adding document to project: 1.bam} is failed: Subtask {BAM/SAM file import: 1.bam} is failed: Subtask {Convert BAM to UGENE database (1.bam)} is failed: Converting assembly from 1.bam to 1_2.ugenedb failed: Error opening SQLite database: unable to open database file!Document was removed

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          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-7338 Convert BAM to UGENE database sometimes leads to crash

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              yalgaer Yuliya Algaer
              Reporter:
              s.samoilenko Svetlana Samoilenko
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: