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  1. UGENE
  2. UGENE-7738

[Sequence] Amino export is not working correctly

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    Details

    • Tests Type:
      Functional/Unit
    • Sprint:
      DEV-46-1, DEV-46-2, DEV-46-3, DEV-46-4, DEV-46-5, DEV-46-RELEASE, DEV-47-1
    • Affect Type:
      Userdefined

      Description

      The scenario test_7448_4 needs to be repeated several times to reproduce the bug.

      1. Copy human_T1.fa to the tmp folder and open it.
      2. Create a new annotation with location "join(10..16,18..20)".
      3. Actions>Export->Export sequence of selected annotations...
        The "Export Sequence of Selected Annotations" dialog appears.
      4. Check the "Translate to amino alphabet" and click the "Export".
        A new sequence window appears.
      5. Repeat steps 3-4, until the export sequence is "SPT". That is, usually it is equal to SPS, but from the >7th time it will be SPT.

      The scenario is not reproducible in WD because Sequence View calls the "Extract annotation regions" task, while WD calls the "Extract annotated regions" task.

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            Assignee:
            dsukhomlinov Dmitrii Sukhomlinov
            Reporter:
            biserova Evelina
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: